Per-script thresholds would dramatically reduce false positive rates. Treating Mathematical Alphanumeric Symbols with the same urgency as Cyrillic makes no sense when the data shows a 0.145 gap in mean SSIM between them.
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The pruned nodes (in red) represent entire regions of space that the algorithm never examines. The points inside those regions are never checked. Compare the "Nodes Visited" count to the total number of points. The quadtree is doing far less work than a brute-force scan.